AFcluster
Predict conformational substates using AlphaFold2 on multiple sequence alignments.
Predict conformational substates using AlphaFold2 on multiple sequence alignments. A clustering method by sequence similarity allows AlphaFold2 to sample alternate states.
Estimated resource cost: 0.000527
Categories: Structure Prediction & Folding
Tags: Conformation Generation Protein Folding Proteins
Key Capabilities
- Predict alternative protein conformations.
- Sample clustering based on sequence similarity.
- Creates a 2D projection and cluster on the modeled proteins.
Runtime Statistics
| Metric | Value |
|---|---|
| runtime_mean | 5219 |
| runtime_median | 3026 |
| runtime_std | 6592 |
| runtime_90th_percentile | 10130 |
| runtime_max | 48741 |
Similar Tools
- Boltz-1 (AlphaFold3)
- Boltz-2 (AlphaFold3)
- Chai-1 (AlphaFold3)
- IntelliFold (AlphaFold3)
Ready to submit your job?
Review your configuration, then confirm the estimated credit cost before you run the job. Note that credit estimates are not guaranteed and runtime can vary depending on inputs and settings.
Estimated Credits: 0.000527
Invite-only, limited-time access. Please contact ztang@getantibody.com.
Invite-only, limited-time access. Please contact ztang@getantibody.com.