AlphaFind
Fast structure similarity search across AlphaFold DB.
AlphaFind provides fast, structure-based retrieval across AlphaFold DB by embedding whole protein folds and ranking globally similar structures with similarity metrics.
Estimated resource cost: 0.000248
Categories: Evolution & Phylogenetics
Tags: Protein Clustering Proteins
Key Capabilities
- Trained from scratch by the Antibody Platform team and does not make any external API requests.
- Searches AlphaFold DB by global 3D structure similarity.
- Uses compact embeddings for scalable retrieval.
- Returns ranked neighbors with similarity metrics.
- Supports inspection via structural superpositions.
Runtime Statistics
| Metric | Value |
|---|---|
| runtime_mean | 50 |
| runtime_median | 49 |
| runtime_std | 2 |
| runtime_90th_percentile | 56 |
| runtime_max | 56 |
Similar Tools
- Foldtree
- MAFFT MSA Generation
- MUSCLE v5 MSA Generation
- mmseqs2 MSA Generation
Ready to submit your job?
Review your configuration, then confirm the estimated credit cost before you run the job. Note that credit estimates are not guaranteed and runtime can vary depending on inputs and settings.
Estimated Credits: 0.000248
Invite-only, limited-time access. Please contact ztang@getantibody.com.
Invite-only, limited-time access. Please contact ztang@getantibody.com.