Foldseek Structural Clustering
Use the Foldseek easy-cluster algorthim to cluster structures using a representative structure.
The Foldseek easy-cluster algorthim clusters protein structures using a combination of structural and sequence characteristics and allows near full control on search parameters.
Estimated resource cost: 0.000496
Categories: Utilities & Conversions
Tags: Protein Clustering Proteins
Key Capabilities
- Structural clustering of PDBs or mmCIFs by creating a structural alignment.
- Includes advanced filters and thresholds to tailor the clustering to your experimental design.
- Provides a collection exportable charts of cluster anchors, cluster members, and overall cluster groups.
Runtime Statistics
| Metric | Value |
|---|---|
| runtime_mean | 16 |
| runtime_median | 16 |
| runtime_std | 8 |
| runtime_90th_percentile | 22 |
| runtime_max | 56 |
Similar Tools
- ClusterProt
- Kluster
- LDDT Structural Comparison
- PDB Animator
Ready to submit your job?
Review your configuration, then confirm the estimated credit cost before you run the job. Note that credit estimates are not guaranteed and runtime can vary depending on inputs and settings.
Estimated Credits: 0.000496
Invite-only, limited-time access. Please contact ztang@getantibody.com.
Invite-only, limited-time access. Please contact ztang@getantibody.com.