Foldtree
Construct phylogenetic trees from protein structures using Foldseek.
Foldtree creates phylogenetic trees from protein structures using Foldseek to align protein structures and generate distance matrices for tree construction.
Estimated resource cost: 0.000124
Categories: Evolution & Phylogenetics
Tags: Protein Clustering Proteins
Key Capabilities
- Generate phloygenetic trees using a structure-based approach.
- Supports Uniprot IDs and protein structure files as inputs.
- Provides fast and accurate phylogenetic trees for genes using structures for a longer evolutionary timescale.
Runtime Statistics
| Metric | Value |
|---|---|
| runtime_mean | 97 |
| runtime_median | 18 |
| runtime_std | 282 |
| runtime_90th_percentile | 222 |
| runtime_max | 3231 |
Similar Tools
- AlphaFind
- MAFFT MSA Generation
- MUSCLE v5 MSA Generation
- mmseqs2 MSA Generation
Ready to submit your job?
Review your configuration, then confirm the estimated credit cost before you run the job. Note that credit estimates are not guaranteed and runtime can vary depending on inputs and settings.
Estimated Credits: 0.000124
Invite-only, limited-time access. Please contact ztang@getantibody.com.
Invite-only, limited-time access. Please contact ztang@getantibody.com.