Kluster
Protein structure clustering and visualization tool using TM-align/US-align structural alignment and dimensionality reduction techniques (UMAP, t-SNE, PCA).
Kluster clusters and analyzes protein structures by their structural similarities. The tool integrates TM-align/US-align for structural alignment with modern dimensionality reduction methods (UMAP, t-SNE, or PCA) and DBSCAN clustering. It calculates pairwise structural similarities using TM-score and RMSD metrics, providing insightful visualizations of protein structure relationships through combined clustering and dimensionality reduction workflows.
Estimated resource cost: 0.000124
Categories: Utilities & Conversions
Tags: Conformation Generation Protein Clustering Proteins
Key Capabilities
- Supports multiple structural comparison metrics (TM-score, RMSD) with both TMalign and USalign alignment tools.
- Implements dimensionality reduction using UMAP, t-SNE, or PCA for intuitive visualization.
- Performs clustering using DBSCAN to identify structural similarity groups.
- Provides interactive 2D/3D visualization with cluster-based coloring.
- Enables parallel processing for efficient analysis of large protein structure datasets.
Runtime Statistics
| Metric | Value |
|---|---|
| runtime_mean | 442 |
| runtime_median | 23 |
| runtime_std | 2469 |
| runtime_90th_percentile | 713 |
| runtime_max | 25888 |
Similar Tools
- ClusterProt
- Foldseek Structural Clustering
- LDDT Structural Comparison
- PDB Animator
Ready to submit your job?
Review your configuration, then confirm the estimated credit cost before you run the job. Note that credit estimates are not guaranteed and runtime can vary depending on inputs and settings.
Estimated Credits: 0.000124
Invite-only, limited-time access. Please contact ztang@getantibody.com.
Invite-only, limited-time access. Please contact ztang@getantibody.com.