MAFFT MSA Generation
Rapidly generate multiple sequence alignments for protein sequences.
MAFFT and phmmmer are powerful tools for aligning multiple biological sequences, each optimized for specific tasks. MAFFT excels in aligning large-scale datasets quickly and accurately with parallel processing options, making it suitable for extensive alignments. phmmer complements this by identifying sequence homologs using profile HMMs, enabling accurate detection of related sequences within large databases.
Estimated resource cost: 0.000062
Categories: Evolution & Phylogenetics, Sequence Analysis & Annotation
Tags: Multiple Sequence Alignment Proteins
Key Capabilities
- Optimized for fast, accurate alignment of extensive biological sequence datasets.
- Offers parallel processing to improve alignment speed and efficiency.
- Maintains alignment quality across diverse biological sequences and applications.
- Designed to detect remote homologs with high sensitivity, leveraging powerful probability models.
- Achieves speed comparable to BLAST with HMMER3, overcoming previous computational challenges.
Runtime Statistics
| Metric | Value |
|---|---|
| runtime_mean | 2 |
| runtime_median | 2 |
| runtime_std | 1 |
| runtime_90th_percentile | 2 |
| runtime_max | 7 |
Similar Tools
- MUSCLE v5 MSA Generation
- mmseqs2 MSA Generation
- ANARCI
- ANARCII
Ready to submit your job?
Review your configuration, then confirm the estimated credit cost before you run the job. Note that credit estimates are not guaranteed and runtime can vary depending on inputs and settings.
Estimated Credits: 0.000062
Invite-only, limited-time access. Please contact ztang@getantibody.com.
Invite-only, limited-time access. Please contact ztang@getantibody.com.