Transcript Assembly
Easily perform transcript quantification using an input fastq file.
Takes in raw transcriptome data from an RNAseq experiment in and automatically assembles and quantifies transcripts. No reference genome required!
Estimated resource cost: 0.00068882
Categories: Multi-omics
Tags: RNA-seq Transcript Assembly
Key Capabilities
- Automatically assembles raw reads into valid transcripts without requiring a reference genome.
- Automatically quantifies transcripts.
- Automatically removes adapters and other unnecessary sequences.
- Automatically performs quality control on read data.
- Supports compressed fastq files.
Runtime Statistics
| Metric | Value |
|---|---|
| runtime_mean | 4480 |
| runtime_median | 219 |
| runtime_std | 8094 |
| runtime_90th_percentile | 11938 |
| runtime_max | 33724 |
Similar Tools
- Interleaved FASTQ Splitter
- DEAnalysis
- Pangolin RNA Splicing Prediction
Ready to submit your job?
Review your configuration, then confirm the estimated credit cost before you run the job. Note that credit estimates are not guaranteed and runtime can vary depending on inputs and settings.
Estimated Credits: 0.00068882
Invite-only, limited-time access. Please contact ztang@getantibody.com.
Invite-only, limited-time access. Please contact ztang@getantibody.com.